Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper homeostasis protein | SAMN03003324_02111 | Not Available | Negative | 2294469 - 2295221 | 26933.4 |
| n4-(beta-n-acetylglucosaminyl)-l-asparaginase | SAMN03003324_02112 | Not Available | Negative | 2295232 - 2296266 | 37131.9 |
| carbon-nitrogen hydrolase | SAMN03003324_02113 | Not Available | Negative | 2296377 - 2297183 | 31129.3 |
| 2-keto-4-methylthiobutyrate aminotransferase apoenzyme | SAMN03003324_02114 | Not Available | Negative | 2297221 - 2298366 | 43174.8 |
| hypothetical protein | SAMN03003324_02115 | Not Available | Positive | 2298438 - 2299208 | 28765.8 |
| hypothetical protein | SAMN03003324_02116 | Not Available | Positive | 2299279 - 2299521 | 9402.32 |
| rna recognition motif. (a.k.a. rrm, rbd, or rnp domain) | SAMN03003324_02117 | Not Available | Positive | 2299594 - 2299902 | 11283.3 |
| uncharacterized membrane protein yhhn | SAMN03003324_02118 | Not Available | Positive | 2300015 - 2300710 | 26080.8 |
| penicillin-binding protein 1c | SAMN03003324_02119 | Not Available | Negative | 2300714 - 2303107 | 89581.4 |
| hypothetical protein | SAMN03003324_02120 | Not Available | Negative | 2303109 - 2308679 | 206288.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

