Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN03003324_02101 | Not Available | Positive | 2282137 - 2282955 | 29632.0 |
| organic radical activating enzyme | SAMN03003324_02102 | Not Available | Negative | 2283025 - 2283648 | 23348.9 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit | SAMN03003324_02103 | Not Available | Positive | 2283743 - 2284087 | 13051.9 |
| 8-oxo-dgtp diphosphatase | SAMN03003324_02104 | Not Available | Negative | 2284123 - 2284524 | 15410.5 |
| hypothetical protein | SAMN03003324_02105 | Not Available | Positive | 2284749 - 2285381 | 23894.7 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN03003324_02106 | Not Available | Positive | 2285519 - 2288677 | 116586.0 |
| predicted pyrophosphatase or phosphodiesterase, alkp superfamily | SAMN03003324_02107 | Not Available | Positive | 2288715 - 2290058 | 49071.6 |
| predicted oxidoreductase | SAMN03003324_02108 | Not Available | Positive | 2290517 - 2291665 | 42279.0 |
| methylenetetrahydrofolate dehydrogenase (nadp+) / methenyltetrahydrofolate cyclohydrolase | SAMN03003324_02109 | Not Available | Negative | 2291741 - 2292622 | 31549.4 |
| gtp-binding protein lepa | SAMN03003324_02110 | Not Available | Negative | 2292651 - 2294438 | 66976.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

