Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_02061 | Not Available | Negative | 2238263 - 2238868 | 23881.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_02062 | Not Available | Positive | 2239299 - 2239871 | 22829.6 |
| fecr family protein | SAMN03003324_02063 | Not Available | Positive | 2240008 - 2241171 | 43633.4 |
| cold shock protein (beta-ribbon, cspa family) | SAMN03003324_02064 | Not Available | Positive | 2241204 - 2241440 | 8740.35 |
| predicted transcriptional regulator | SAMN03003324_02065 | Not Available | Positive | 2241551 - 2241946 | 15089.1 |
| blar1 peptidase m56 | SAMN03003324_02066 | Not Available | Positive | 2241967 - 2243523 | 57316.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_02067 | Not Available | Positive | 2243633 - 2246074 | 90498.9 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SAMN03003324_02068 | Not Available | Negative | 2246324 - 2247595 | 47324.8 |
| biotin synthase | SAMN03003324_02069 | Not Available | Negative | 2247579 - 2248589 | 37555.1 |
| dethiobiotin synthetase | SAMN03003324_02070 | Not Available | Negative | 2248616 - 2249230 | 22954.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

