Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_02031 | Not Available | Positive | 2203404 - 2204681 | 47887.2 |
| transcriptional regulator, tetr family | SAMN03003324_02032 | Not Available | Positive | 2204815 - 2205420 | 23227.6 |
| serine palmitoyltransferase | SAMN03003324_02033 | Not Available | Positive | 2205704 - 2206909 | 44053.1 |
| nucleoside-diphosphate-sugar epimerase | SAMN03003324_02034 | Not Available | Positive | 2206978 - 2207967 | 36845.4 |
| hypothetical protein | SAMN03003324_02035 | Not Available | Positive | 2208117 - 2208323 | 7741.44 |
| carboxypepd_reg-like domain-containing protein | SAMN03003324_02036 | Not Available | Positive | 2208320 - 2210896 | 98894.8 |
| protein of unknown function | SAMN03003324_02037 | Not Available | Positive | 2210918 - 2211490 | 21945.6 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN03003324_02038 | Not Available | Positive | 2211601 - 2212221 | 24134.6 |
| exodeoxyribonuclease vii large subunit | SAMN03003324_02039 | Not Available | Positive | 2212308 - 2213681 | 51693.4 |
| exodeoxyribonuclease vii small subunit | SAMN03003324_02040 | Not Available | Positive | 2213659 - 2213865 | 7911.41 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

