Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac-type dna-binding protein | SAMN03003324_02011 | Not Available | Negative | 2183686 - 2184585 | 34569.5 |
| l-rhamnose mutarotase | SAMN03003324_02012 | Not Available | Positive | 2184715 - 2185053 | 13257.2 |
| altronate hydrolase | SAMN03003324_02013 | Not Available | Positive | 2185050 - 2186699 | 59076.7 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_02014 | Not Available | Positive | 2186709 - 2187473 | 27049.5 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN03003324_02015 | Not Available | Positive | 2187482 - 2188351 | 31524.5 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN03003324_02016 | Not Available | Positive | 2188362 - 2189150 | 28160.8 |
| uncharacterized conserved protein phnb, glyoxalase superfamily | SAMN03003324_02017 | Not Available | Negative | 2189158 - 2189529 | 13739.8 |
| myo-inositol-1-phosphate synthase | SAMN03003324_02018 | Not Available | Positive | 2189818 - 2191011 | 43627.3 |
| peroxiredoxin | SAMN03003324_02019 | Not Available | Negative | 2191083 - 2192312 | 45926.9 |
| hypothetical protein | SAMN03003324_02020 | Not Available | Positive | 2192460 - 2193644 | 45455.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

