Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase xerd | SAMN03003324_00134 | Not Available | Negative | 144161 - 145132 | 37843.2 |
| hypothetical protein | SAMN03003324_00135 | Not Available | Negative | 145142 - 145444 | 11392.9 |
| Trna-lys | Not Available | Not Available | Positive | 145669 - 145744 | Not Available |
| putative oligopeptide transporter, opt family | SAMN03003324_00137 | Not Available | Negative | 145934 - 148009 | 72693.3 |
| d-alpha,beta-d-heptose 1,7-bisphosphate phosphatase | SAMN03003324_00138 | Not Available | Positive | 148114 - 148608 | 18556.1 |
| hypothetical protein | SAMN03003324_00139 | Not Available | Negative | 148627 - 148830 | 7530.76 |
| transaldolase | SAMN03003324_00140 | Not Available | Negative | 149437 - 150102 | 23621.6 |
| glutamate synthase (nadph/nadh) large chain | SAMN03003324_00142 | Not Available | Positive | 150692 - 155248 | 166794.0 |
| glutamate synthase (nadh) small subunit | SAMN03003324_00143 | Not Available | Positive | 155252 - 156718 | 53891.8 |
| spou rrna methylase family protein | SAMN03003324_00144 | Not Available | Negative | 156801 - 157340 | 20064.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

