Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrodipicolinate reductase | SAMN03003324_01940 | Not Available | Positive | 2103224 - 2104030 | 29023.0 |
| threonine/homoserine efflux transporter rhta | SAMN03003324_01941 | Not Available | Positive | 2104085 - 2104978 | 32390.8 |
| hypothetical protein | SAMN03003324_01942 | Not Available | Positive | 2105245 - 2105829 | 22095.5 |
| hypothetical protein | SAMN03003324_01943 | Not Available | Negative | 2105805 - 2106785 | 34282.5 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_01944 | Not Available | Positive | 2107021 - 2107587 | 21462.9 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_01945 | Not Available | Positive | 2107661 - 2108398 | 26976.0 |
| hypothetical protein | SAMN03003324_01946 | Not Available | Negative | 2108427 - 2109107 | 26460.4 |
| l-lysine 6-transaminase | SAMN03003324_01947 | Not Available | Positive | 2109319 - 2110650 | 50239.0 |
| hypothetical protein | SAMN03003324_01948 | Not Available | Positive | 2110654 - 2111067 | 15434.5 |
| hypothetical protein | SAMN03003324_01949 | Not Available | Positive | 2111241 - 2111537 | 11530.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

