Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| papain-like cysteine protease avrrpt2 | SAMN03003324_01930 | Not Available | Positive | 2093170 - 2093682 | 18884.8 |
| hypothetical protein | SAMN03003324_01931 | Not Available | Positive | 2093727 - 2095166 | 53644.7 |
| hypothetical protein | SAMN03003324_01932 | Not Available | Positive | 2095191 - 2096720 | 57991.2 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN03003324_01933 | Not Available | Positive | 2096792 - 2097370 | 22308.1 |
| putative nad(p)h quinone oxidoreductase, pig3 family | SAMN03003324_01934 | Not Available | Negative | 2097376 - 2098350 | 35103.4 |
| nucleoside-diphosphate-sugar epimerase | SAMN03003324_01935 | Not Available | Positive | 2098654 - 2099547 | 31839.0 |
| arac-type dna-binding protein | SAMN03003324_01936 | Not Available | Positive | 2099599 - 2100522 | 35974.4 |
| helix-turn-helix domain-containing protein | SAMN03003324_01937 | Not Available | Negative | 2100535 - 2101431 | 35414.1 |
| glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein | SAMN03003324_01938 | Not Available | Positive | 2101828 - 2102370 | 20619.7 |
| dna-binding transcriptional regulator, marr family | SAMN03003324_01939 | Not Available | Positive | 2102729 - 2103217 | 18784.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

