Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmc | SAMN03003324_01900 | Not Available | Positive | 2062957 - 2063628 | 25505.4 |
| predicted oxidoreductase | SAMN03003324_01901 | Not Available | Positive | 2063806 - 2064762 | 35612.0 |
| predicted purr-regulated permease perm | SAMN03003324_01902 | Not Available | Positive | 2064855 - 2065967 | 41285.7 |
| xtp/ditp diphosphohydrolase | SAMN03003324_01903 | Not Available | Positive | 2065992 - 2066807 | 30978.8 |
| atp-dependent rna helicase rhle | SAMN03003324_01904 | Not Available | Negative | 2066876 - 2068180 | 48414.9 |
| prolyl oligopeptidase family protein | SAMN03003324_01905 | Not Available | Positive | 2068416 - 2070824 | 89466.8 |
| lipoprotein-releasing system permease protein | SAMN03003324_01906 | Not Available | Negative | 2070891 - 2072120 | 46289.7 |
| helix-turn-helix domain-containing protein | SAMN03003324_01907 | Not Available | Negative | 2072209 - 2072472 | 9925.05 |
| uncharacterized conserved protein ybbc, duf1343 family | SAMN03003324_01908 | Not Available | Positive | 2072562 - 2073830 | 47435.9 |
| hypothetical protein | SAMN03003324_01909 | Not Available | Positive | 2073842 - 2074048 | 7896.02 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

