Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01880 | Not Available | Positive | 2042889 - 2043419 | 20034.9 |
| outer membrane protein assembly factor bama | SAMN03003324_01881 | Not Available | Negative | 2043433 - 2045745 | 88416.9 |
| rna methyltransferase, trmh family | SAMN03003324_01882 | Not Available | Positive | 2045799 - 2046548 | 27586.7 |
| Trna-cys | Not Available | Not Available | Positive | 2046597 - 2046667 | Not Available |
| hypothetical protein | SAMN03003324_01884 | Not Available | Positive | 2046706 - 2046891 | 6869.41 |
| dihydroorotate oxidase a | SAMN03003324_01885 | Not Available | Negative | 2046978 - 2048006 | 37876.0 |
| atp-binding cassette, subfamily f, member 3 | SAMN03003324_01886 | Not Available | Positive | 2048162 - 2050078 | 72562.5 |
| alpha-amylase | SAMN03003324_01887 | Not Available | Negative | 2050108 - 2051595 | 57190.0 |
| acyl-coa hydrolase | SAMN03003324_01888 | Not Available | Positive | 2051720 - 2052199 | 17835.4 |
| predicted rna-binding protein, contains pua-like domain | SAMN03003324_01889 | Not Available | Negative | 2052261 - 2052665 | 15690.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

