Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylglucosaminyl deacetylase, lmbe family | SAMN03003324_01839 | Not Available | Negative | 1996927 - 1999380 | 90463.5 |
| late embryogenesis abundant protein | SAMN03003324_01840 | Not Available | Negative | 1999502 - 2000101 | 21653.9 |
| hypothetical protein | SAMN03003324_01841 | Not Available | Negative | 2000203 - 2000361 | 6189.87 |
| putative oxidoreductase | SAMN03003324_01842 | Not Available | Negative | 2000438 - 2000875 | 15780.1 |
| transcriptional regulator, tetr family | SAMN03003324_01843 | Not Available | Negative | 2000904 - 2001503 | 22842.7 |
| membrane protein | SAMN03003324_01844 | Not Available | Positive | 2001668 - 2002693 | 37472.9 |
| dnaj domain-containing protein | SAMN03003324_01845 | Not Available | Negative | 2002756 - 2003202 | 17093.4 |
| sec-independent protein translocase protein tata | SAMN03003324_01846 | Not Available | Positive | 2003402 - 2003563 | 5682.33 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN03003324_01847 | Not Available | Positive | 2003606 - 2004283 | 25655.3 |
| signal transduction histidine kinase | SAMN03003324_01848 | Not Available | Positive | 2004289 - 2005650 | 51082.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

