Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01779 | Not Available | Negative | 1943032 - 1943277 | 9149.1 |
| ribosomal protein s18 acetylase rimi | SAMN03003324_01780 | Not Available | Negative | 1943373 - 1943906 | 21231.6 |
| cysteine desulfurase | SAMN03003324_01781 | Not Available | Negative | 1943984 - 1945132 | 41991.3 |
| phosphomannomutase | SAMN03003324_01782 | Not Available | Negative | 1945138 - 1946526 | 49906.4 |
| methyltransferase domain-containing protein | SAMN03003324_01783 | Not Available | Positive | 1946660 - 1947391 | 28934.7 |
| undecaprenyl-diphosphatase | SAMN03003324_01784 | Not Available | Positive | 1947388 - 1947951 | 21513.9 |
| zinc transporter zupt | SAMN03003324_01785 | Not Available | Positive | 1947951 - 1948688 | 26977.7 |
| dna-binding transcriptional regulator, marr family | SAMN03003324_01786 | Not Available | Negative | 1948685 - 1949137 | 17135.1 |
| hypothetical protein | SAMN03003324_01787 | Not Available | Negative | 1949137 - 1949310 | 6730.93 |
| putative mrna 3-end processing factor | SAMN03003324_01788 | Not Available | Negative | 1949310 - 1950251 | 35925.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

