Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMN03003324_01769 | Not Available | Negative | 1932615 - 1933499 | 32270.0 |
| thymidylate synthase | SAMN03003324_01770 | Not Available | Positive | 1933608 - 1934402 | 30293.2 |
| dihydrofolate reductase | SAMN03003324_01771 | Not Available | Positive | 1934399 - 1934884 | 17967.7 |
| secd/secf fusion protein | SAMN03003324_01772 | Not Available | Positive | 1935083 - 1938040 | 107377.0 |
| hydroxymethylglutaryl-coa lyase | SAMN03003324_01773 | Not Available | Positive | 1938051 - 1939010 | 35405.4 |
| predicted n-acyltransferase, gnat family | SAMN03003324_01774 | Not Available | Negative | 1939015 - 1939437 | 15678.5 |
| low affinity fe/cu permease | SAMN03003324_01775 | Not Available | Negative | 1939415 - 1939900 | 18157.9 |
| fructose-bisphosphate aldolase | SAMN03003324_01776 | Not Available | Negative | 1940050 - 1941129 | 39606.8 |
| acetyl-coa carboxylase carboxyl transferase subunit beta | SAMN03003324_01777 | Not Available | Positive | 1941283 - 1942128 | 31267.0 |
| peptidase | SAMN03003324_01778 | Not Available | Negative | 1942188 - 1942877 | 26173.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

