Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN03003324_01729 | Not Available | Positive | 1888032 - 1888571 | 20290.4 |
| phosphopantetheine adenylyltransferase | SAMN03003324_01730 | Not Available | Positive | 1888581 - 1889051 | 17569.3 |
| nudix domain-containing protein | SAMN03003324_01731 | Not Available | Negative | 1889061 - 1889687 | 23580.8 |
| orotate phosphoribosyltransferase | SAMN03003324_01732 | Not Available | Positive | 1889865 - 1890524 | 24225.9 |
| hypothetical protein | SAMN03003324_01733 | Not Available | Positive | 1890530 - 1890928 | 14691.7 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN03003324_01734 | Not Available | Negative | 1891043 - 1891849 | 30913.3 |
| threonine/homoserine efflux transporter rhta | SAMN03003324_01735 | Not Available | Negative | 1891885 - 1892793 | 32590.9 |
| clp amino terminal domain-containing protein, pathogenicity island component | SAMN03003324_01736 | Not Available | Positive | 1893097 - 1894854 | 65308.7 |
| c-terminal, d2-small domain-containing protein, of clpb protein | SAMN03003324_01737 | Not Available | Positive | 1894990 - 1895703 | 27192.7 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN03003324_01738 | Not Available | Positive | 1895800 - 1898088 | 86742.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

