Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01719 | Not Available | Negative | 1878883 - 1879119 | 8658.44 |
| serine/threonine-protein kinase hipa | SAMN03003324_01720 | Not Available | Negative | 1879285 - 1880571 | 48695.2 |
| helix-turn-helix | SAMN03003324_01721 | Not Available | Negative | 1880571 - 1880918 | 13353.3 |
| Tmrna,resume consensus sequence (at 88): tataattggcgaaaataa | Not Available | Not Available | Positive | 1881298 - 1881663 | Not Available |
| hypothetical protein | SAMN03003324_01723 | Not Available | Negative | 1881792 - 1882124 | 12253.5 |
| pas domain s-box-containing protein | SAMN03003324_01724 | Not Available | Negative | 1882230 - 1885016 | 105620.0 |
| hypothetical protein | SAMN03003324_01725 | Not Available | Positive | 1885156 - 1885467 | 11700.5 |
| hypothetical protein | SAMN03003324_01726 | Not Available | Positive | 1885588 - 1885707 | 4303.49 |
| exodeoxyribonuclease-5 | SAMN03003324_01727 | Not Available | Negative | 1885704 - 1887155 | 55213.8 |
| protein of unknown function | SAMN03003324_01728 | Not Available | Positive | 1887208 - 1888041 | 31057.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

