Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | SAMN03003324_01689 | Not Available | Positive | 1845297 - 1846568 | 45913.2 |
| chorismate synthase | SAMN03003324_01690 | Not Available | Positive | 1846568 - 1847656 | 38730.5 |
| pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (e1) component | SAMN03003324_01691 | Not Available | Negative | 1847697 - 1850120 | 89908.9 |
| protein of unknown function | SAMN03003324_01692 | Not Available | Positive | 1850308 - 1850694 | 13751.8 |
| aspartate aminotransferase | SAMN03003324_01693 | Not Available | Positive | 1850790 - 1851950 | 42925.3 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN03003324_01694 | Not Available | Positive | 1851994 - 1852434 | 16588.6 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN03003324_01695 | Not Available | Positive | 1852868 - 1853428 | 21618.2 |
| ca2+:h+ antiporter | SAMN03003324_01696 | Not Available | Positive | 1853527 - 1854717 | 42606.3 |
| glycosyl-hydrolase 97 c-terminal, oligomerisation | SAMN03003324_01697 | Not Available | Positive | 1854880 - 1856847 | 73556.8 |
| beta-xylosidase | SAMN03003324_01698 | Not Available | Positive | 1856874 - 1858796 | 73288.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

