Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 1836750 - 1836826 | Not Available |
| putative hydrolase of the had superfamily | SAMN03003324_01680 | Not Available | Positive | 1836892 - 1837530 | 24169.7 |
| hypothetical protein | SAMN03003324_01681 | Not Available | Positive | 1837532 - 1837858 | 12499.3 |
| catalase | SAMN03003324_01682 | Not Available | Positive | 1837951 - 1839459 | 57530.6 |
| l-proline dehydrogenase | SAMN03003324_01683 | Not Available | Negative | 1839537 - 1840715 | 44501.6 |
| ribosome-associated protein | SAMN03003324_01684 | Not Available | Positive | 1840818 - 1841024 | 7657.48 |
| 3-dehydroquinate synthase | SAMN03003324_01685 | Not Available | Positive | 1841024 - 1842091 | 39870.7 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN03003324_01686 | Not Available | Positive | 1842081 - 1842983 | 35344.7 |
| prephenate dehydratase | SAMN03003324_01687 | Not Available | Positive | 1843250 - 1844083 | 31310.8 |
| 3-deoxy-d-arabinoheptulosonate-7-phosphate synthase | SAMN03003324_01688 | Not Available | Positive | 1844145 - 1845284 | 41922.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

