Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent aldehyde dehydrogenase | SAMN03003324_01659 | Not Available | Negative | 1811242 - 1812822 | 56178.6 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN03003324_01660 | Not Available | Negative | 1812834 - 1813751 | 33717.0 |
| peptidase family m1 | SAMN03003324_01661 | Not Available | Negative | 1813875 - 1815566 | 64742.9 |
| xaa-pro aminopeptidase | SAMN03003324_01662 | Not Available | Negative | 1815579 - 1816976 | 51847.9 |
| hypothetical protein | SAMN03003324_01663 | Not Available | Negative | 1816980 - 1819730 | 102697.0 |
| duf1680 family protein | SAMN03003324_01664 | Not Available | Positive | 1820037 - 1823099 | 114000.0 |
| surface polysaccharide o-acyltransferase, integral membrane enzyme | SAMN03003324_01665 | Not Available | Negative | 1823075 - 1824313 | 47855.3 |
| transcriptional regulator, lyttr family | SAMN03003324_01666 | Not Available | Negative | 1824400 - 1825320 | 35575.0 |
| hypothetical protein | SAMN03003324_01667 | Not Available | Negative | 1825350 - 1825850 | 18632.1 |
| hypothetical protein | SAMN03003324_01668 | Not Available | Negative | 1825981 - 1828638 | 99776.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

