Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01649 | Not Available | Positive | 1794488 - 1796221 | 67378.6 |
| proton-dependent oligopeptide transporter, pot family | SAMN03003324_01650 | Not Available | Negative | 1796239 - 1797621 | 51948.1 |
| dipeptidyl peptidase iv (dpp iv) n-terminal region | SAMN03003324_01651 | Not Available | Negative | 1797632 - 1799929 | 87432.9 |
| basic amino acid/polyamine antiporter, apa family | SAMN03003324_01652 | Not Available | Negative | 1799926 - 1801338 | 51888.8 |
| protein of unknown function | SAMN03003324_01653 | Not Available | Negative | 1801341 - 1803158 | 70284.7 |
| arac-type dna-binding protein | SAMN03003324_01654 | Not Available | Negative | 1803207 - 1804106 | 33762.2 |
| starch-binding associating with outer membrane | SAMN03003324_01655 | Not Available | Negative | 1804277 - 1805875 | 59175.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_01656 | Not Available | Negative | 1805892 - 1808867 | 110442.0 |
| d-amino-acid dehydrogenase | SAMN03003324_01657 | Not Available | Negative | 1808978 - 1810219 | 45896.9 |
| 4-hydroxyproline epimerase | SAMN03003324_01658 | Not Available | Negative | 1810247 - 1811245 | 36278.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

