Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_01578 | Not Available | Positive | 1711381 - 1714509 | 114694.0 |
| susd family protein | SAMN03003324_01579 | Not Available | Positive | 1714534 - 1716021 | 56662.1 |
| protein of unknown function | SAMN03003324_01580 | Not Available | Positive | 1716074 - 1717318 | 46518.4 |
| transcriptional regulator, laci family | SAMN03003324_01581 | Not Available | Positive | 1717416 - 1718444 | 38559.6 |
| ser/thr protein kinase rdoa involved in cpx stress response, mazf antagonist | SAMN03003324_01582 | Not Available | Positive | 1718531 - 1719586 | 40339.9 |
| conserved hypothetical protein | SAMN03003324_01583 | Not Available | Positive | 1719649 - 1720635 | 37542.2 |
| moba-like ntp transferase domain-containing protein | SAMN03003324_01584 | Not Available | Positive | 1720851 - 1721561 | 26090.2 |
| hypothetical protein | SAMN03003324_01585 | Not Available | Positive | 1721565 - 1722440 | 32961.1 |
| cdp-alcohol phosphatidyltransferase | SAMN03003324_01586 | Not Available | Positive | 1722440 - 1723375 | 35630.6 |
| lysylphosphatidylglycerol synthase tm region | SAMN03003324_01587 | Not Available | Positive | 1723375 - 1724385 | 38164.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

