Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01548 | Not Available | Negative | 1682276 - 1682815 | 20814.0 |
| thioredoxin | SAMN03003324_01549 | Not Available | Positive | 1682966 - 1683376 | 15617.9 |
| uracil-dna glycosylase | SAMN03003324_01550 | Not Available | Positive | 1683378 - 1684061 | 25600.4 |
| lrp/asnc family transcriptional regulator, leucine-responsive regulatory protein | SAMN03003324_01551 | Not Available | Negative | 1684103 - 1684573 | 17984.3 |
| iron (metal) dependent repressor, dtxr family | SAMN03003324_01552 | Not Available | Positive | 1684715 - 1685377 | 25007.2 |
| manganese transport protein | SAMN03003324_01553 | Not Available | Positive | 1685385 - 1687247 | 68315.9 |
| ssra-binding protein | SAMN03003324_01554 | Not Available | Positive | 1687315 - 1687764 | 17603.5 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN03003324_01555 | Not Available | Negative | 1687765 - 1688421 | 24477.6 |
| replication restart dna helicase pria | SAMN03003324_01556 | Not Available | Negative | 1688538 - 1691018 | 94284.1 |
| uncharacterized membrane protein ygdd, tmem256/duf423 family | SAMN03003324_01557 | Not Available | Negative | 1691019 - 1691405 | 14189.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

