Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferritin-like domain-containing protein | SAMN03003324_01528 | Not Available | Negative | 1663805 - 1664515 | 25300.2 |
| two component transcriptional regulator, lyttr family | SAMN03003324_01529 | Not Available | Positive | 1664653 - 1665441 | 29683.7 |
| two component regulator propeller | SAMN03003324_01530 | Not Available | Positive | 1665488 - 1668367 | 109500.0 |
| hypothetical protein | SAMN03003324_01531 | Not Available | Positive | 1668793 - 1668990 | 7332.06 |
| hypothetical protein | SAMN03003324_01532 | Not Available | Positive | 1669059 - 1670177 | 43117.7 |
| helix-turn-helix domain-containing protein | SAMN03003324_01533 | Not Available | Negative | 1670184 - 1670513 | 12570.2 |
| udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligase | SAMN03003324_01534 | Not Available | Negative | 1670542 - 1671894 | 51091.2 |
| [lsu ribosomal protein l11p]-lysine n-methyltransferase | SAMN03003324_01535 | Not Available | Negative | 1671919 - 1672758 | 31669.5 |
| triosephosphate isomerase | SAMN03003324_01536 | Not Available | Negative | 1672758 - 1673519 | 27728.8 |
| udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase | SAMN03003324_01537 | Not Available | Negative | 1673641 - 1674816 | 43376.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

