Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase assembly protein subunit 15 | SAMN03003324_01488 | Not Available | Positive | 1626030 - 1627088 | 39606.3 |
| protoheme ix farnesyltransferase | SAMN03003324_01489 | Not Available | Positive | 1627106 - 1628008 | 33722.4 |
| cytochrome c oxidase subunit 3 | SAMN03003324_01490 | Not Available | Positive | 1628010 - 1628600 | 22051.1 |
| cytochrome c oxidase subunit 3 | SAMN03003324_01491 | Not Available | Positive | 1628631 - 1629338 | 26703.8 |
| caa(3)-type oxidase, subunit iv | SAMN03003324_01492 | Not Available | Positive | 1629363 - 1629722 | 13599.2 |
| protein sco1/2 | SAMN03003324_01493 | Not Available | Positive | 1629719 - 1630426 | 26804.4 |
| putative membrane protein | SAMN03003324_01494 | Not Available | Positive | 1630448 - 1631023 | 21785.8 |
| hypothetical protein | SAMN03003324_01495 | Not Available | Positive | 1631191 - 1631442 | 8934.14 |
| hypothetical protein | SAMN03003324_01496 | Not Available | Positive | 1631390 - 1631854 | 17690.5 |
| tigr02453 family protein | SAMN03003324_01497 | Not Available | Positive | 1631851 - 1632507 | 25296.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

