Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lema protein | SAMN03003324_00085 | Not Available | Positive | 88560 - 89123 | 21391.1 |
| hypothetical protein | SAMN03003324_00086 | Not Available | Positive | 89107 - 89475 | 13914.5 |
| abc-type transport system, involved in lipoprotein release, permease component | SAMN03003324_00087 | Not Available | Positive | 89612 - 91999 | 89505.6 |
| short-chain dehydrogenase | SAMN03003324_00088 | Not Available | Negative | 92153 - 93109 | 33801.8 |
| endonuclease-8 | SAMN03003324_00089 | Not Available | Negative | 93157 - 93891 | 28671.5 |
| pap2 superfamily protein | SAMN03003324_00090 | Not Available | Negative | 93992 - 94735 | 27203.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_00091 | Not Available | Negative | 94815 - 95579 | 26857.3 |
| arac-type dna-binding protein | SAMN03003324_00092 | Not Available | Negative | 95692 - 96597 | 34475.5 |
| pepsy-associated tm region | SAMN03003324_00093 | Not Available | Negative | 96742 - 98379 | 62327.6 |
| hypothetical protein | SAMN03003324_00094 | Not Available | Negative | 98388 - 98669 | 10572.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

