Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative endonuclease | SAMN03003324_01468 | Not Available | Positive | 1603181 - 1603543 | 14222.9 |
| glutamine cyclotransferase | SAMN03003324_01469 | Not Available | Positive | 1603524 - 1604612 | 40081.6 |
| protein of unknown function | SAMN03003324_01470 | Not Available | Negative | 1604618 - 1605172 | 19793.6 |
| glucose-6-phosphate isomerase | SAMN03003324_01471 | Not Available | Negative | 1605248 - 1606900 | 61662.2 |
| hypothetical protein | SAMN03003324_01472 | Not Available | Positive | 1607110 - 1607619 | 17458.3 |
| bacterial peptide chain release factor 2 (brf-2) | SAMN03003324_01473 | Not Available | Positive | 1607862 - 1608776 | 34733.0 |
| acetyl esterase/lipase | SAMN03003324_01474 | Not Available | Positive | 1608787 - 1609716 | 33902.6 |
| transglutaminase-like superfamily protein | SAMN03003324_01475 | Not Available | Negative | 1609713 - 1610582 | 33656.2 |
| predicted o-methyltransferase yrrm | SAMN03003324_01476 | Not Available | Positive | 1610626 - 1611408 | 29973.1 |
| surface antigen | SAMN03003324_01477 | Not Available | Negative | 1611405 - 1612526 | 42186.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

