Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein, fis family | SAMN03003324_01428 | Not Available | Negative | 1557756 - 1558988 | 46253.2 |
| pp_01410 | SAMN03003324_01429 | Not Available | Negative | 1559022 - 1560455 | Not Available |
| hypothetical protein | SAMN03003324_01430 | Not Available | Positive | 1560504 - 1562411 | 72644.4 |
| hypothetical protein | SAMN03003324_01431 | Not Available | Positive | 1562492 - 1564276 | 67863.3 |
| protein of unknown function | SAMN03003324_01432 | Not Available | Positive | 1564659 - 1565360 | 27571.1 |
| hypothetical protein | SAMN03003324_01433 | Not Available | Positive | 1565360 - 1565854 | 19953.5 |
| predicted zn-dependent protease | SAMN03003324_01434 | Not Available | Negative | 1566380 - 1567342 | 36311.3 |
| glycoside-hydrolase family gh114 | SAMN03003324_01435 | Not Available | Negative | 1567802 - 1568644 | 31840.0 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN03003324_01436 | Not Available | Negative | 1568723 - 1569118 | 14550.8 |
| helix-turn-helix domain-containing protein | SAMN03003324_01437 | Not Available | Positive | 1569274 - 1570155 | 34208.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

