Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dctp deaminase | SAMN03003324_01418 | Not Available | Negative | 1549361 - 1549897 | 19949.0 |
| 4'-phosphopantetheinyl transferase superfamily protein | SAMN03003324_01419 | Not Available | Positive | 1549964 - 1550599 | 24334.6 |
| lipoyl(octanoyl) transferase | SAMN03003324_01420 | Not Available | Positive | 1550610 - 1551317 | 26715.8 |
| l-serine dehydratase | SAMN03003324_01421 | Not Available | Negative | 1551298 - 1552725 | 50753.9 |
| putative mg2+ transporter-c (mgtc) family protein | SAMN03003324_01422 | Not Available | Negative | 1552760 - 1553416 | 24333.6 |
| chaperonin groel | SAMN03003324_01423 | Not Available | Negative | 1553519 - 1555159 | 57856.6 |
| chaperonin groes | SAMN03003324_01424 | Not Available | Negative | 1555228 - 1555518 | 10356.3 |
| preprotein translocase subunit secg | SAMN03003324_01425 | Not Available | Negative | 1555747 - 1556100 | 11736.5 |
| hypothetical protein | SAMN03003324_01426 | Not Available | Negative | 1556115 - 1557206 | 41533.4 |
| lipopolysaccharide-assembly | SAMN03003324_01427 | Not Available | Negative | 1557243 - 1557752 | 19128.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

