Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | SAMN03003324_01408 | Not Available | Positive | 1538086 - 1539111 | 39351.3 |
| two component transcriptional regulator, lyttr family | SAMN03003324_01409 | Not Available | Positive | 1539145 - 1539903 | 28907.9 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN03003324_01410 | Not Available | Negative | 1539924 - 1540667 | 28151.9 |
| nudix domain-containing protein | SAMN03003324_01411 | Not Available | Negative | 1540675 - 1541229 | 20417.3 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_01412 | Not Available | Negative | 1541320 - 1543803 | 91785.6 |
| thioredoxin | SAMN03003324_01413 | Not Available | Positive | 1543900 - 1544499 | 23131.0 |
| atp-dependent clp protease adaptor protein clps | SAMN03003324_01414 | Not Available | Negative | 1544523 - 1544828 | 11799.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_01415 | Not Available | Negative | 1544870 - 1545745 | 31354.7 |
| enoyl-coa hydratase/carnithine racemase | SAMN03003324_01416 | Not Available | Negative | 1545750 - 1546508 | 28087.3 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN03003324_01417 | Not Available | Negative | 1546524 - 1549217 | 99909.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

