Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN03003324_01398 | Not Available | Positive | 1526324 - 1527022 | 26632.7 |
| helicase | SAMN03003324_01399 | Not Available | Positive | 1527051 - 1529309 | 86075.8 |
| diaminopimelate epimerase | SAMN03003324_01400 | Not Available | Negative | 1529310 - 1530116 | 29910.9 |
| do/deqq family serine protease | SAMN03003324_01401 | Not Available | Positive | 1530365 - 1531900 | 53229.5 |
| succinate dehydrogenase / fumarate reductase cytochrome b subunit | SAMN03003324_01402 | Not Available | Positive | 1532110 - 1532790 | 25172.4 |
| succinate dehydrogenase subunit a | SAMN03003324_01403 | Not Available | Positive | 1532818 - 1534797 | 73660.7 |
| succinate dehydrogenase / fumarate reductase iron-sulfur subunit | SAMN03003324_01404 | Not Available | Positive | 1534822 - 1535592 | 28015.4 |
| tonb family c-terminal domain-containing protein | SAMN03003324_01405 | Not Available | Negative | 1535685 - 1536935 | 47152.9 |
| predicted transcriptional regulator | SAMN03003324_01406 | Not Available | Negative | 1536937 - 1537308 | 14275.5 |
| hypothetical protein | SAMN03003324_01407 | Not Available | Negative | 1537556 - 1537822 | 10158.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

