Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline dehydrogenase | SAMN03003324_00075 | Not Available | Negative | 78021 - 79700 | 62835.2 |
| arac-type dna-binding protein | SAMN03003324_00076 | Not Available | Positive | 79899 - 80747 | 32827.7 |
| helix-turn-helix domain-containing protein | SAMN03003324_00077 | Not Available | Negative | 80758 - 81666 | 34885.8 |
| kdo2-lipid iv(a) lauroyltransferase | SAMN03003324_00078 | Not Available | Negative | 81726 - 82607 | 35095.1 |
| hepn domain-containing protein | SAMN03003324_00079 | Not Available | Positive | 82788 - 83654 | 33452.3 |
| methyltransferase domain-containing protein | SAMN03003324_00080 | Not Available | Negative | 83655 - 84326 | 24895.7 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN03003324_00081 | Not Available | Negative | 84415 - 85620 | 44558.4 |
| arac-type dna-binding protein | SAMN03003324_00082 | Not Available | Positive | 85674 - 86645 | 36860.8 |
| leucine rich repeat-containing protein | SAMN03003324_00083 | Not Available | Positive | 86693 - 87490 | 30013.6 |
| hypothetical protein | SAMN03003324_00084 | Not Available | Positive | 87507 - 88553 | 40040.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

