Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarase, class ii | SAMN03003324_01358 | Not Available | Positive | 1483357 - 1484754 | 49887.9 |
| hypothetical protein | SAMN03003324_01359 | Not Available | Positive | 1484756 - 1485253 | 19371.2 |
| s1/p1 nuclease | SAMN03003324_01360 | Not Available | Positive | 1485347 - 1486138 | 30040.9 |
| conserved hypothetical protein | SAMN03003324_01361 | Not Available | Positive | 1486298 - 1486753 | 16733.4 |
| hypothetical protein | SAMN03003324_01362 | Not Available | Positive | 1486906 - 1487577 | 25345.5 |
| carboxyl-terminal processing protease | SAMN03003324_01363 | Not Available | Positive | 1487786 - 1489942 | 79949.2 |
| regulator of protease activity hflc, stomatin/prohibitin superfamily | SAMN03003324_01364 | Not Available | Negative | 1490018 - 1490941 | 34428.8 |
| capsule synthesis protein pga_cap | SAMN03003324_01365 | Not Available | Negative | 1491014 - 1492153 | 40866.0 |
| lipoprotein spr | SAMN03003324_01366 | Not Available | Negative | 1492226 - 1492780 | 20808.9 |
| pyruvate dehydrogenase e1 component alpha subunit | SAMN03003324_01367 | Not Available | Positive | 1493015 - 1494010 | 36988.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

