Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01287 | Not Available | Negative | 1402910 - 1403143 | 8827.92 |
| hemoglobin | SAMN03003324_01288 | Not Available | Positive | 1403536 - 1403931 | 15107.2 |
| uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domains | SAMN03003324_01289 | Not Available | Negative | 1404238 - 1405086 | 30727.5 |
| hypothetical protein | SAMN03003324_01290 | Not Available | Positive | 1405360 - 1405548 | 7404.24 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_01291 | Not Available | Positive | 1405529 - 1408708 | 115704.0 |
| susd family protein | SAMN03003324_01292 | Not Available | Positive | 1408743 - 1410227 | 54855.4 |
| thiamine pyrophosphokinase | SAMN03003324_01293 | Not Available | Positive | 1410359 - 1410922 | 21234.3 |
| l-amino acid n-acyltransferase ynca | SAMN03003324_01294 | Not Available | Positive | 1410919 - 1411413 | 18259.2 |
| peptidase family m28 | SAMN03003324_01295 | Not Available | Negative | 1411416 - 1412735 | 48297.7 |
| protein of unknown function | SAMN03003324_01296 | Not Available | Negative | 1412764 - 1413858 | 41517.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

