Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01247 | Not Available | Negative | 1353514 - 1353672 | 6096.22 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN03003324_01248 | Not Available | Positive | 1353708 - 1355153 | 55035.8 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN03003324_01249 | Not Available | Negative | 1355357 - 1356067 | 25641.4 |
| 2-dehydro-3-deoxygluconokinase | SAMN03003324_01250 | Not Available | Negative | 1356006 - 1357067 | 38594.1 |
| glucuronate isomerase | SAMN03003324_01251 | Not Available | Negative | 1357070 - 1358491 | 54457.2 |
| mannonate dehydratase | SAMN03003324_01252 | Not Available | Negative | 1358527 - 1359714 | 44218.8 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN03003324_01253 | Not Available | Negative | 1359726 - 1360538 | 28879.8 |
| mfs transporter, acs family, hexuronate transporter | SAMN03003324_01254 | Not Available | Negative | 1360549 - 1361841 | 47796.2 |
| predicted dehydrogenase | SAMN03003324_01255 | Not Available | Negative | 1361874 - 1363055 | 43401.3 |
| transcriptional regulator, laci family | SAMN03003324_01256 | Not Available | Negative | 1363194 - 1364228 | 38226.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

