Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| muramoyltetrapeptide carboxypeptidase | SAMN03003324_01227 | Not Available | Negative | 1330192 - 1331112 | 33839.9 |
| methionyl-trna synthetase | SAMN03003324_01228 | Not Available | Positive | 1331129 - 1333237 | 79793.0 |
| hypothetical protein | SAMN03003324_01229 | Not Available | Negative | 1333437 - 1333571 | 5377.32 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_01230 | Not Available | Positive | 1333784 - 1336948 | 114582.0 |
| starch-binding associating with outer membrane | SAMN03003324_01231 | Not Available | Positive | 1336975 - 1338600 | 58911.2 |
| hypothetical protein | SAMN03003324_01232 | Not Available | Positive | 1338740 - 1339408 | 25331.7 |
| susd family protein | SAMN03003324_01233 | Not Available | Negative | 1339888 - 1340241 | 12974.4 |
| hypothetical protein | SAMN03003324_01234 | Not Available | Negative | 1340576 - 1340716 | 4748.54 |
| Trna-arg | Not Available | Not Available | Positive | 1341245 - 1341319 | Not Available |
| hypothetical protein | SAMN03003324_01236 | Not Available | Negative | 1341731 - 1342672 | 36021.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

