Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted o-methyltransferase yrrm | SAMN03003324_01217 | Not Available | Negative | 1317772 - 1318407 | 24042.9 |
| putative holliday junction resolvase | SAMN03003324_01218 | Not Available | Negative | 1318416 - 1318832 | 15777.2 |
| dna polymerase-3 subunit delta' | SAMN03003324_01219 | Not Available | Positive | 1318872 - 1320020 | 43594.6 |
| cell fate regulator yaat, psp1 superfamily (controls sporulation, competence, biofilm development) | SAMN03003324_01220 | Not Available | Positive | 1320113 - 1321450 | 50868.9 |
| gliding motility-associated lipoprotein gldh | SAMN03003324_01221 | Not Available | Positive | 1321437 - 1321910 | 18237.8 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN03003324_01222 | Not Available | Negative | 1321902 - 1323206 | 47536.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN03003324_01223 | Not Available | Positive | 1323555 - 1326623 | 111052.0 |
| starch-binding associating with outer membrane | SAMN03003324_01224 | Not Available | Positive | 1326704 - 1328158 | 52163.8 |
| hypothetical protein | SAMN03003324_01225 | Not Available | Positive | 1328583 - 1329350 | 28577.9 |
| hypothetical protein | SAMN03003324_01226 | Not Available | Positive | 1329431 - 1330117 | 24602.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

