Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein ybjq, upf0145 family | SAMN03003324_01187 | Not Available | Negative | 1288950 - 1289270 | 11111.5 |
| 5'(3')-deoxyribonucleotidase | SAMN03003324_01188 | Not Available | Negative | 1289312 - 1289851 | 21182.1 |
| small subunit ribosomal protein s16 | SAMN03003324_01189 | Not Available | Positive | 1289974 - 1290540 | 20585.2 |
| 16s rrna processing protein rimm | SAMN03003324_01190 | Not Available | Positive | 1290626 - 1291153 | 20314.2 |
| trna (guanine37-n(1)-) methyltransferase | SAMN03003324_01191 | Not Available | Positive | 1291158 - 1291835 | 25080.0 |
| hypothetical protein | SAMN03003324_01192 | Not Available | Positive | 1291970 - 1292233 | 10225.5 |
| large subunit ribosomal protein l19 | SAMN03003324_01193 | Not Available | Positive | 1292395 - 1292742 | 13133.1 |
| phosphatidylserine decarboxylase | SAMN03003324_01194 | Not Available | Negative | 1293066 - 1293734 | 25266.7 |
| hypoxanthine phosphoribosyltransferase | SAMN03003324_01195 | Not Available | Negative | 1293792 - 1294337 | 20307.6 |
| transglycosylase | SAMN03003324_01196 | Not Available | Negative | 1294352 - 1296493 | 80497.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

