Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_00055 | Not Available | Positive | 56667 - 57179 | 19773.3 |
| hlyd family secretion protein | SAMN03003324_00056 | Not Available | Positive | 57452 - 58534 | 41508.1 |
| atp-binding cassette, subfamily b | SAMN03003324_00057 | Not Available | Positive | 58539 - 60704 | 81350.7 |
| outer membrane protein | SAMN03003324_00058 | Not Available | Positive | 60711 - 62033 | 50968.7 |
| hypothetical protein | SAMN03003324_00059 | Not Available | Positive | 62060 - 62377 | 12378.1 |
| class iib bacteriocin, lactobin a/cerein 7b family | SAMN03003324_00060 | Not Available | Positive | 62465 - 62653 | 6209.45 |
| class iib bacteriocin, lactobin a/cerein 7b family | SAMN03003324_00061 | Not Available | Positive | 62694 - 62882 | 6444.68 |
| ost-hth/lotus domain-containing protein | SAMN03003324_00062 | Not Available | Positive | 63134 - 63958 | 30809.0 |
| fad-nad(p)-binding | SAMN03003324_00063 | Not Available | Negative | 63966 - 65702 | 65107.7 |
| l,d-transpeptidase catalytic domain | SAMN03003324_00064 | Not Available | Negative | 65802 - 67343 | 58228.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

