Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription-repair coupling factor | SAMN03003324_01167 | Not Available | Negative | 1261559 - 1264900 | 126594.0 |
| protein of unknown function | SAMN03003324_01168 | Not Available | Positive | 1264952 - 1265296 | 12720.9 |
| tm2 domain-containing protein | SAMN03003324_01169 | Not Available | Positive | 1265289 - 1265654 | 13960.3 |
| dinuclear metal center protein, ybgi/sa1388 family | SAMN03003324_01170 | Not Available | Positive | 1265677 - 1266774 | 40229.6 |
| phospholipase c | SAMN03003324_01171 | Not Available | Negative | 1266804 - 1269233 | 91704.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN03003324_01172 | Not Available | Positive | 1269311 - 1269901 | 23203.8 |
| outer membrane cobalamin receptor protein | SAMN03003324_01173 | Not Available | Positive | 1270237 - 1272693 | 92316.3 |
| protein of unknown function | SAMN03003324_01174 | Not Available | Positive | 1272774 - 1274030 | 45293.1 |
| outer membrane receptor proteins, mostly fe transport | SAMN03003324_01175 | Not Available | Positive | 1274103 - 1276517 | 88995.8 |
| hypothetical protein | SAMN03003324_01176 | Not Available | Positive | 1276776 - 1277522 | 28609.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

