Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN03003324_01147 | Not Available | Positive | 1237496 - 1240003 | 93847.7 |
| hypothetical protein | SAMN03003324_01148 | Not Available | Positive | 1240139 - 1241068 | 35803.2 |
| cold-shock dna-binding protein family | SAMN03003324_01149 | Not Available | Positive | 1241173 - 1241364 | 6946.25 |
| rrna maturation rnase ybey | SAMN03003324_01150 | Not Available | Positive | 1241962 - 1242435 | 18036.9 |
| atp-binding cassette, subfamily f, uup | SAMN03003324_01151 | Not Available | Positive | 1242634 - 1244508 | 71109.8 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme | SAMN03003324_01152 | Not Available | Positive | 1244648 - 1246510 | 69450.9 |
| ig-like domain-containing protein | SAMN03003324_01153 | Not Available | Positive | 1246654 - 1248288 | 61462.3 |
| carbonic anhydrase or acetyltransferase, isoleucine patch superfamily | SAMN03003324_01154 | Not Available | Negative | 1248285 - 1248797 | 18123.0 |
| l-aspartate oxidase | SAMN03003324_01155 | Not Available | Negative | 1248825 - 1250411 | 58888.4 |
| quinolinate synthetase | SAMN03003324_01156 | Not Available | Positive | 1250810 - 1251802 | 36883.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

