Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter | SAMN03003324_01137 | Not Available | Negative | 1226244 - 1226861 | 22906.3 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | SAMN03003324_01138 | Not Available | Negative | 1226864 - 1227649 | 28424.2 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | SAMN03003324_01139 | Not Available | Negative | 1227646 - 1229058 | 52273.9 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | SAMN03003324_01140 | Not Available | Negative | 1229085 - 1230131 | 37353.4 |
| hypothetical protein | SAMN03003324_01141 | Not Available | Negative | 1230254 - 1231483 | 46890.1 |
| response regulator receiver domain-containing protein | SAMN03003324_01142 | Not Available | Positive | 1231585 - 1233138 | 60516.5 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | SAMN03003324_01143 | Not Available | Positive | 1233146 - 1233571 | 15697.7 |
| alanine dehydrogenase | SAMN03003324_01144 | Not Available | Positive | 1233613 - 1234839 | 44510.5 |
| predicted arabinose efflux permease, mfs family | SAMN03003324_01145 | Not Available | Negative | 1234843 - 1236015 | 42165.6 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN03003324_01146 | Not Available | Negative | 1236070 - 1237398 | 49816.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

