Pedobacter antarcticus strain ATCC 51969

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter antarcticus strain ATCC 51969 is a notable bacterial species characterized by the presence of flagella, facilitating motility. This organism has a single replicon, which indicates a simplified genomic structure that may contribute to its adaptability in various environments. The genomic data for this strain is cataloged under the accession number FONS00000000.1. As a member of the Pedobacter genus, P. antarcticus is typically associated with polar regions, particularly Antarctica, where it plays a role in the microbial communities of extreme environments. The ability to thrive in such conditions suggests that this bacterium possesses unique biochemical and physiological adaptations. The presence of flagella is particularly significant, as it allows for movement in response to environmental stimuli, which can be crucial for survival in nutrient-scarce habitats. The ecological role of Pedobacter antarcticus strain ATCC 51969 is likely linked to organic matter decomposition and nutrient cycling in its native habitat. By participating in these processes, this bacterium contributes to the overall health and stability of the polar ecosystems. Understanding the traits and behaviors of this strain can provide insights into microbial life in extreme conditions and its implications for ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter antarcticus
Strainstrain ATCC 51969

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter antarcticus strain ATCC 51969 genome assembly, contig:

Gene Summary

Adenine Count

1362221 bp

Thymine Count

1361672 bp

Guanine Count

914548 bp

Cytosine Count

930759 bp

Genome Length

4570120 bp

Protein-coding Genes

4074 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-opening dioxygenase, catalytic subunit, ligb familySAMN03003324_01127Not AvailableNegative1219156 - 121998330249.7
polyisoprenoid-binding protein yceiSAMN03003324_01128Not AvailableNegative1220068 - 122064021256.3
protein of unknown functionSAMN03003324_01129Not AvailableNegative1220719 - 122122518448.5
hypothetical proteinSAMN03003324_01130Not AvailableNegative1221233 - 122204530568.0
copper chaperone copzSAMN03003324_01131Not AvailableNegative1222055 - 122259419547.6
hypothetical proteinSAMN03003324_01132Not AvailableNegative1222775 - 122314913329.3
peptidyl-prolyl cis-trans isomerase b (cyclophilin b)SAMN03003324_01133Not AvailablePositive1223334 - 122405326612.2
exodeoxyribonuclease-3SAMN03003324_01134Not AvailablePositive1224067 - 122484329720.5
5-formyltetrahydrofolate cyclo-ligaseSAMN03003324_01135Not AvailableNegative1224864 - 122542721866.5
translation elongation factor p (ef-p)SAMN03003324_01136Not AvailableNegative1225526 - 122608621389.5

Displaying genes 1131 – 1140 of 4162 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.