Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aromatic ring-opening dioxygenase, catalytic subunit, ligb family | SAMN03003324_01127 | Not Available | Negative | 1219156 - 1219983 | 30249.7 |
| polyisoprenoid-binding protein ycei | SAMN03003324_01128 | Not Available | Negative | 1220068 - 1220640 | 21256.3 |
| protein of unknown function | SAMN03003324_01129 | Not Available | Negative | 1220719 - 1221225 | 18448.5 |
| hypothetical protein | SAMN03003324_01130 | Not Available | Negative | 1221233 - 1222045 | 30568.0 |
| copper chaperone copz | SAMN03003324_01131 | Not Available | Negative | 1222055 - 1222594 | 19547.6 |
| hypothetical protein | SAMN03003324_01132 | Not Available | Negative | 1222775 - 1223149 | 13329.3 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN03003324_01133 | Not Available | Positive | 1223334 - 1224053 | 26612.2 |
| exodeoxyribonuclease-3 | SAMN03003324_01134 | Not Available | Positive | 1224067 - 1224843 | 29720.5 |
| 5-formyltetrahydrofolate cyclo-ligase | SAMN03003324_01135 | Not Available | Negative | 1224864 - 1225427 | 21866.5 |
| translation elongation factor p (ef-p) | SAMN03003324_01136 | Not Available | Negative | 1225526 - 1226086 | 21389.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

