Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| error-prone dna polymerase | SAMN03003324_00045 | Not Available | Negative | 42085 - 45315 | 122065.0 |
| protein imub | SAMN03003324_00046 | Not Available | Negative | 45326 - 46786 | 55192.5 |
| protein imua | SAMN03003324_00047 | Not Available | Negative | 46827 - 47558 | 26557.4 |
| helix-turn-helix domain-containing protein | SAMN03003324_00048 | Not Available | Positive | 47632 - 48435 | 30471.9 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN03003324_00049 | Not Available | Negative | 48514 - 49947 | 52877.6 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN03003324_00050 | Not Available | Negative | 49940 - 53107 | 115719.0 |
| membrane fusion protein, multidrug efflux system | SAMN03003324_00051 | Not Available | Negative | 53166 - 54248 | 40737.9 |
| hypothetical protein | SAMN03003324_00052 | Not Available | Negative | 54339 - 54737 | 15144.8 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN03003324_00053 | Not Available | Positive | 54883 - 55359 | 18517.8 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN03003324_00054 | Not Available | Negative | 55413 - 56390 | 37572.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

