Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-3-methyladenine glycosylase i | SAMN03003324_01077 | Not Available | Negative | 1167475 - 1168047 | 21925.1 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN03003324_01078 | Not Available | Negative | 1168052 - 1168393 | 12956.5 |
| methylated-dna-protein-cysteine methyltransferase related protein | SAMN03003324_01079 | Not Available | Negative | 1168403 - 1168729 | 12124.6 |
| trna (guanine-n7-)-methyltransferase | SAMN03003324_01080 | Not Available | Negative | 1168729 - 1169379 | 25329.3 |
| gdp-l-fucose synthase | SAMN03003324_01081 | Not Available | Positive | 1169500 - 1170429 | 34662.6 |
| lysr family transcriptional regulator, hydrogen peroxide-inducible genes activator | SAMN03003324_01082 | Not Available | Positive | 1170509 - 1171441 | 35174.3 |
| superoxide dismutase, fe-mn family | SAMN03003324_01083 | Not Available | Negative | 1171514 - 1172125 | 22320.2 |
| trna(adenine34) deaminase | SAMN03003324_01084 | Not Available | Negative | 1172208 - 1172681 | 17340.7 |
| pp_01068 | SAMN03003324_01085 | Not Available | Negative | 1172683 - 1173018 | Not Available |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN03003324_01086 | Not Available | Positive | 1173129 - 1174316 | 43920.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

