Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN03003324_01027 | Not Available | Negative | 1107441 - 1107737 | 11532.2 |
| uncharacterized protein | SAMN03003324_01028 | Not Available | Negative | 1108051 - 1110357 | 84911.0 |
| pyruvate dehydrogenase e1 component beta subunit | SAMN03003324_01029 | Not Available | Negative | 1110536 - 1111522 | 36022.7 |
| pd-(d/e)xk nuclease superfamily protein | SAMN03003324_01030 | Not Available | Negative | 1111637 - 1114546 | 110226.0 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN03003324_01031 | Not Available | Negative | 1114578 - 1117805 | 121484.0 |
| thioredoxin-like | SAMN03003324_01032 | Not Available | Positive | 1117854 - 1118369 | 19119.9 |
| beta-glucosidase | SAMN03003324_01033 | Not Available | Negative | 1118433 - 1120139 | 62476.7 |
| hypothetical protein | SAMN03003324_01034 | Not Available | Positive | 1120258 - 1120431 | 6364.24 |
| sugar phosphate isomerase/epimerase | SAMN03003324_01035 | Not Available | Positive | 1120620 - 1121540 | 34138.6 |
| alpha-1,2-mannosidase, putative | SAMN03003324_01036 | Not Available | Negative | 1121658 - 1123952 | 85150.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

