Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | SAMN03003324_01017 | Not Available | Positive | 1097594 - 1098190 | 22710.9 |
| pas domain s-box-containing protein | SAMN03003324_01018 | Not Available | Positive | 1098282 - 1100375 | 78496.1 |
| transcriptional regulator, hxlr family | SAMN03003324_01019 | Not Available | Negative | 1100358 - 1100744 | 14530.9 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN03003324_01020 | Not Available | Positive | 1100838 - 1101578 | 25592.6 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | SAMN03003324_01021 | Not Available | Negative | 1101575 - 1102405 | 29394.0 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN03003324_01022 | Not Available | Negative | 1102422 - 1103858 | 52996.2 |
| acetyltransferase (gnat) family protein | SAMN03003324_01023 | Not Available | Positive | 1103950 - 1104459 | 19468.2 |
| hypothetical protein | SAMN03003324_01024 | Not Available | Negative | 1104456 - 1104992 | 20233.1 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN03003324_01025 | Not Available | Negative | 1105076 - 1106488 | 52366.3 |
| integrase core domain-containing protein | SAMN03003324_01026 | Not Available | Negative | 1106848 - 1107121 | 10201.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

