Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | SAMN03003324_00997 | Not Available | Positive | 1079934 - 1081208 | 47507.6 |
| methyltransferase domain-containing protein | SAMN03003324_00998 | Not Available | Positive | 1081201 - 1082382 | 44296.4 |
| cold shock protein (beta-ribbon, cspa family) | SAMN03003324_00999 | Not Available | Negative | 1082447 - 1082644 | 7334.72 |
| alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin) | SAMN03003324_01000 | Not Available | Negative | 1082768 - 1083403 | 23592.0 |
| trypsin-like peptidase domain-containing protein | SAMN03003324_01001 | Not Available | Negative | 1083584 - 1084678 | 40794.9 |
| rna polymerase sigma factor, sigma-70 family | SAMN03003324_01002 | Not Available | Negative | 1084675 - 1085250 | 21976.3 |
| hypothetical protein | SAMN03003324_01003 | Not Available | Positive | 1085391 - 1085600 | 7279.51 |
| adenylosuccinate lyase | SAMN03003324_01004 | Not Available | Positive | 1085699 - 1087045 | 50556.1 |
| fe-s cluster biogenesis protein nfua, 4fe-4s-binding domain | SAMN03003324_01005 | Not Available | Positive | 1087133 - 1087684 | 20202.0 |
| myo-inositol-1(or 4)-monophosphatase | SAMN03003324_01006 | Not Available | Negative | 1087781 - 1088578 | 29479.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

