Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter antarcticus |
| Strain | strain ATCC 51969 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362221 bp
Thymine Count
1361672 bp
Guanine Count
914548 bp
Cytosine Count
930759 bp
Genome Length
4570120 bp
Protein-coding Genes
4074 genes
Non-Coding Genes
88 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | SAMN03003324_00035 | Not Available | Negative | 31053 - 32162 | 42320.3 |
| predicted arabinose efflux permease, mfs family | SAMN03003324_00036 | Not Available | Negative | 32266 - 33462 | 42923.5 |
| arac-type dna-binding protein | SAMN03003324_00037 | Not Available | Positive | 33594 - 34445 | 32466.9 |
| hypothetical protein | SAMN03003324_00038 | Not Available | Negative | 34432 - 36012 | 58990.4 |
| abc-type multidrug transport system, atpase component | SAMN03003324_00039 | Not Available | Negative | 36016 - 36888 | 32090.1 |
| transcriptional regulator, tetr family | SAMN03003324_00040 | Not Available | Positive | 37017 - 37592 | 21745.9 |
| thioredoxin reductase | SAMN03003324_00041 | Not Available | Positive | 37678 - 38589 | 32982.4 |
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN03003324_00042 | Not Available | Negative | 38800 - 39489 | 25843.5 |
| h+/cl-antiporter clca | SAMN03003324_00043 | Not Available | Positive | 39713 - 40996 | 45987.6 |
| carboxymethylenebutenolidase | SAMN03003324_00044 | Not Available | Positive | 41077 - 41964 | 32617.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

