Flavobacterium phragmitis strain CGMCC 1.10370

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium phragmitis strain CGMCC 1.10370 is characterized as a rod-shaped bacterium that possesses flagella, indicating motility. The strain has a single replicon, which suggests a streamlined genomic organization that may contribute to its adaptability within specific environments. The genomic information for this strain is cataloged under the accession number FOMH00000000.1. The presence of flagella in Flavobacterium phragmitis strain CGMCC 1.10370 allows for movement in its aquatic habitat, which may facilitate its role in the ecosystem. This motility can enhance its ability to colonize surfaces or interact with other microorganisms in its environment, potentially contributing to nutrient cycling and organic matter decomposition. Flavobacterium species are known for their role in the degradation of complex organic materials, particularly in aquatic ecosystems. The ecological insight regarding CGMCC 1.10370 is its potential contribution to the breakdown of plant-derived compounds, given its association with Phragmites, a common wetland plant. This strain may play a significant role in the microbial community dynamics within such habitats, influencing nutrient availability and supporting overall ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium phragmitis
Strainstrain CGMCC 1.10370

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium phragmitis strain CGMCC 1.10370
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium phragmitis strain CGMCC 1.10370 genome assembly,

Gene Summary

Adenine Count

2006973 bp

Thymine Count

1972101 bp

Guanine Count

1031158 bp

Cytosine Count

1024969 bp

Genome Length

6041292 bp

Protein-coding Genes

5001 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein tolcSAMN05216297_101479Not AvailablePositive512740 - 51407450019.8
rnd family efflux transporter, mfp subunitSAMN05216297_101480Not AvailablePositive514087 - 51515437925.6
hydrophobic/amphiphilic exporter-1, hae1 familySAMN05216297_101481Not AvailablePositive515284 - 518460115853.0
mfs transporter, dha1 family, tetracycline resistance proteinSAMN05216297_101482Not AvailablePositive518850 - 52009445031.0
chat domain-containing proteinSAMN05216297_101483Not AvailableNegative520572 - 523217101240.0
pkd domain-containing proteinSAMN05216297_101484Not AvailableNegative523581 - 52553374277.7
hypothetical proteinSAMN05216297_101485Not AvailableNegative525645 - 52661634713.0
hypothetical proteinSAMN05216297_101486Not AvailableNegative527020 - 52731911682.2
rna polymerase sigma factor, sigma-70 familySAMN05216297_101487Not AvailablePositive527452 - 52803622455.0
anaphase-promoting complex, cyclosome, subunit 3SAMN05216297_101488Not AvailablePositive528039 - 52876428504.4

Displaying genes 481 – 490 of 5066 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.