Pedobacter suwonensis strain DSM 18130

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter suwonensis strain DSM 18130 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and possesses flagella, although it does not utilize them for locomotion. It thrives optimally at a temperature of 32°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. A notable genetic feature of Pedobacter suwonensis DSM 18130 is the presence of a single replicon, which suggests a streamlined genetic architecture. This bacterium is non-spore-forming, which may have implications for its survival strategies in varying environmental conditions. The strain is cataloged under the accession number FOJM00000000.1, which provides a reference for genomic studies and phylogenetic analysis. Given its aerobic nature, Pedobacter suwonensis DSM 18130 likely plays a role in the decomposition of organic matter in oxygen-rich environments, contributing to nutrient cycling. The characteristics of this bacterium suggest its potential ecological significance in microbial communities, particularly in soils or aquatic systems where aerobic conditions prevail. Its non-motile nature may influence its ecological interactions and niche occupation, emphasizing the importance of studying such bacteria to understand their roles in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter suwonensis
Strainstrain DSM 18130

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter suwonensis strain DSM 18130
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter suwonensis strain DSM 18130 genome assembly, contig:

Gene Summary

Adenine Count

1755941 bp

Thymine Count

1751697 bp

Guanine Count

1139050 bp

Cytosine Count

1154468 bp

Genome Length

5803831 bp

Protein-coding Genes

4873 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component system, ompr family, sensor histidine kinase kdpdSAMN04488511_13113Not AvailablePositive5733235 - 573436543007.7
hypothetical proteinSAMN04488511_13114Not AvailablePositive5734735 - 573511213915.3
hypothetical proteinSAMN04488511_13115Not AvailablePositive5735258 - 57354196319.11
predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domainsSAMN04488511_13116Not AvailablePositive5735581 - 573654938159.3
pas domain s-box-containing proteinSAMN04488511_1321Not AvailableNegative5737062 - 5741450165890.0
sugar transferaseSAMN04488511_1322Not AvailableNegative5741696 - 574289545382.2
response regulator receiver domain-containing proteinSAMN04488511_1323Not AvailableNegative5742895 - 574329915219.5
pas domain s-box-containing proteinSAMN04488511_1324Not AvailablePositive5743716 - 574600485141.7
1-deoxy-d-xylulose-5-phosphate synthaseSAMN04488511_1325Not AvailableNegative5746503 - 574843170258.5
condensin subunit scpaSAMN04488511_1326Not AvailablePositive5748635 - 574937828747.7

Displaying genes 4891 – 4900 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.