Pedobacter suwonensis strain DSM 18130

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter suwonensis strain DSM 18130 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and possesses flagella, although it does not utilize them for locomotion. It thrives optimally at a temperature of 32°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. A notable genetic feature of Pedobacter suwonensis DSM 18130 is the presence of a single replicon, which suggests a streamlined genetic architecture. This bacterium is non-spore-forming, which may have implications for its survival strategies in varying environmental conditions. The strain is cataloged under the accession number FOJM00000000.1, which provides a reference for genomic studies and phylogenetic analysis. Given its aerobic nature, Pedobacter suwonensis DSM 18130 likely plays a role in the decomposition of organic matter in oxygen-rich environments, contributing to nutrient cycling. The characteristics of this bacterium suggest its potential ecological significance in microbial communities, particularly in soils or aquatic systems where aerobic conditions prevail. Its non-motile nature may influence its ecological interactions and niche occupation, emphasizing the importance of studying such bacteria to understand their roles in ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter suwonensis
Strainstrain DSM 18130

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter suwonensis strain DSM 18130
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter suwonensis strain DSM 18130 genome assembly, contig:

Gene Summary

Adenine Count

1755941 bp

Thymine Count

1751697 bp

Guanine Count

1139050 bp

Cytosine Count

1154468 bp

Genome Length

5803831 bp

Protein-coding Genes

4873 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN04488511_12714Not AvailableNegative5627691 - 562845526712.9
arac-type dna-binding proteinSAMN04488511_12715Not AvailableNegative5628542 - 562894915707.8
hypothetical proteinSAMN04488511_12716Not AvailableNegative5629080 - 562956217795.7
glycyl-trna synthetaseSAMN04488511_12717Not AvailableNegative5629699 - 563134263546.5
glycerophosphoryl diester phosphodiesteraseSAMN04488511_12718Not AvailablePositive5631858 - 563277834443.6
abc-2 type transport system atp-binding proteinSAMN04488511_12719Not AvailablePositive5632882 - 563358925984.9
hypothetical proteinSAMN04488511_12720Not AvailablePositive5633594 - 563413619530.6
abc-2 type transport system permease proteinSAMN04488511_12721Not AvailablePositive5634210 - 563493526973.6
protein involved in gliding motility gldgSAMN04488511_12722Not AvailablePositive5634935 - 563662063103.6
dna polymerase iii, beta subunitSAMN04488511_12723Not AvailablePositive5636654 - 563777841231.3

Displaying genes 4801 – 4810 of 4932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.